Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015816618.1_cds_XP_016498885.1_12861
CDS Infomation

[gene=LOC107817545] [db_xref=GeneID:107817545] [protein=pentatricopeptide repeat-containing protein At2g30780-like] [protein_id=XP_016498885.1] [location=join(10635..11048,11630..12745)] [gbkey=CDS]
Sequence

ATGATGAAGAGGGTATGGAGAATCTCGGATGCTTCCCAGACGGAAGCAATTCTCCAAAGA
TTTTCTGAAAATTATAGAAAACATTCATGGTGTTACACGATTGCACGAGCTTCAGCTAAT
ACGTTGTGGGTTCGAGGACTAGCAGGCGGAGCAGCTTCTTCCCAACCTGCCTGGTCACAG
GTATTTGCTTTGTTCGCAGACAGGTGGAGTCACGCTGATTCATTGGTCAAACAGGATCTG
AGAGAAAGGGTTTCACATTTAAGGGATGAGTTGCTAGCTTGCAGTGGTGATGCTGAAAAG
ATTGAGAGAATATTAGCAGATAGAGGGGTTTTGTTGTTTAGGAGGTATGCAGATGGTTCT
GCGGTTGTTGAGCTCTTAAAACAGCTAAAATCTTCTCCCCAATTAGCGCTCCAGGCTTTT
GACTGGAGGAGAAGACAATTGGATTACTGGACTCCCATGACAGCTGAGGAGTATTCCAAG
GCTATTGTTGTGGCTGGAAGGTTAAAGAATGTTGATCTTGCAGCTGAACTATTCAAAGAG
GCTTCCAACAAGCAACTCAAGTCCACCTCTTTATATAACGCCCTTATGACTGCTTATATG
TTCAATGGTTTGGCTGTAAAGTGTCAATCAGTTTTTCGGGACTTGAAGAGGGAAGCAACA
TGTACTCCAACTATTGTAACATACAACATACTTATCTCGGTGTTTGGTAGATTAATGTTG
ATAGATCACATGGAGGCAACCTTACGGGAAATAAATGATTTGAATATCTGCCCAAATGTT
AGTACATACAACAATTTAATTGCTGGGTATATCACAGCGTGGATGTGGGATGATGTGGAG
AAGACATATAGAATCATGAAGGCAGGAGGTGTCACACCTGATCTTGCTACCCATTTATTG
ATGCTTCGAGGATATGCACATTCTGGTAAGTTGGATAAGATGGAAGAGATCTATGAGCTT
GTCAAAGGTCATGTTGATCAGTACGGGATCCCATTAATTCGATCTATGATATGTGCTTAC
AGTAAAAGTTCTGACGTAAATAAAGTTCAAAAGATTGAAGAGTTGATGAGGTTGATTCCT
AAAGATGATTATAGGCCTTGGTTGAATGTCATATTAATCTGTCTGTATGCAAAGGAGGAT
TTATTAGACGAGATGGAAAATTCAATAAATGAGGCATTTAAACGTAACACGTCCGTCACA
ACAGTTGGTGTCATGCTTTGCATCATTTCAAGTTATTTCCGAAACAATGCAGTAGACGAG
CTTGCTAATTTTGTTAGCCGTGCAGAATGTGCTGGTTGGAAAATATGTAGGTCCCTTTAC
CACTGCAAGATGGTTATGTATGCTTCACAAAGGCGACTCATTGAAATGGAGCAAGTTCTT
GGCGAGATGGATAAAGTGAACTTGGACTGTTCAAAGAAAACGTTTTGGATATTACTTAAA
GCCTACACAACGTGGGGGGAAAAGGATAAACTTCATCAGGTCTTGGGTATGATGTGCAAG
CATGGATATGGAATTCCTACGAATGGATGA

Peptide Sequence

PEP ID

XP_016498885.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Nicotiana tabacum]
Sequence

MMKRVWRISDASQTEAILQRFSENYRKHSWCYTIARASANTLWVRGLAGGAASSQPAWSQ
VFALFADRWSHADSLVKQDLRERVSHLRDELLACSGDAEKIERILADRGVLLFRRYADGS
AVVELLKQLKSSPQLALQAFDWRRRQLDYWTPMTAEEYSKAIVVAGRLKNVDLAAELFKE
ASNKQLKSTSLYNALMTAYMFNGLAVKCQSVFRDLKREATCTPTIVTYNILISVFGRLML
IDHMEATLREINDLNICPNVSTYNNLIAGYITAWMWDDVEKTYRIMKAGGVTPDLATHLL
MLRGYAHSGKLDKMEEIYELVKGHVDQYGIPLIRSMICAYSKSSDVNKVQKIEELMRLIP
KDDYRPWLNVILICLYAKEDLLDEMENSINEAFKRNTSVTTVGVMLCIISSYFRNNAVDE
LANFVSRAECAGWKICRSLYHCKMVMYASQRRLIEMEQVLGEMDKVNLDCSKKTFWILLK
AYTTWGEKDKLHQVLGMMCKHGYGIPTNG

Transcript Sequence

Gene sequence data has not been registered.